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gdcm-2.8
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10/28/2024 06:50:42 AM
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gdcmAAbortPDU.h
1.43 KB
11/09/2017 08:09:58 AM
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gdcmAAssociateACPDU.h
3.22 KB
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gdcmAAssociateRJPDU.h
1.35 KB
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gdcmAAssociateRQPDU.h
5.41 KB
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gdcmARTIMTimer.h
2.48 KB
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gdcmAReleaseRPPDU.h
1.28 KB
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gdcmAReleaseRQPDU.h
1.28 KB
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gdcmASN1.h
1.22 KB
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gdcmAbstractSyntax.h
1.78 KB
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gdcmAnonymizeEvent.h
1.5 KB
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gdcmAnonymizer.h
6.67 KB
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gdcmApplicationContext.h
1.56 KB
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gdcmApplicationEntity.h
1.81 KB
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gdcmAsynchronousOperationsWindowSub.h
1.37 KB
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gdcmAttribute.h
32.28 KB
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gdcmAudioCodec.h
1011 bytes
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gdcmBase64.h
1.9 KB
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gdcmBaseCompositeMessage.h
2.39 KB
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gdcmBaseNormalizedMessage.h
2.22 KB
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gdcmBasePDU.h
1.96 KB
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gdcmBaseQuery.h
2.74 KB
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gdcmBaseRootQuery.h
4.33 KB
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gdcmBasicOffsetTable.h
3.17 KB
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gdcmBitmap.h
5.7 KB
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gdcmBitmapToBitmapFilter.h
1.22 KB
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gdcmBoxRegion.h
2.02 KB
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gdcmByteBuffer.h
2.45 KB
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gdcmByteSwap.h
1.46 KB
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gdcmByteSwap.txx
4.55 KB
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gdcmByteSwapFilter.h
1.1 KB
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gdcmByteValue.h
6.53 KB
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gdcmCAPICryptoFactory.h
931 bytes
11/09/2017 08:09:58 AM
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gdcmCAPICryptographicMessageSyntax.h
1.96 KB
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gdcmCEchoMessages.h
1.46 KB
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gdcmCFindMessages.h
1.65 KB
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gdcmCMoveMessages.h
1.88 KB
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gdcmCP246ExplicitDataElement.h
1.59 KB
11/09/2017 08:09:58 AM
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gdcmCP246ExplicitDataElement.txx
6.51 KB
11/09/2017 08:09:58 AM
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gdcmCSAElement.h
4.76 KB
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gdcmCSAHeader.h
4.89 KB
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gdcmCSAHeader.txx
957 bytes
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gdcmCSAHeaderDict.h
2.84 KB
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gdcmCSAHeaderDictEntry.h
2.74 KB
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gdcmCStoreMessages.h
1.8 KB
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gdcmCodeString.h
3.67 KB
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gdcmCodec.h
809 bytes
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gdcmCoder.h
1.28 KB
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gdcmCommand.h
5.09 KB
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gdcmCommandDataSet.h
1.7 KB
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gdcmCompositeMessageFactory.h
2.44 KB
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gdcmCompositeNetworkFunctions.h
5.84 KB
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gdcmConfigure.h
5.53 KB
02/05/2018 04:49:23 PM
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gdcmConstCharWrapper.h
1.6 KB
11/09/2017 08:09:58 AM
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gdcmCryptoFactory.h
1.85 KB
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gdcmCryptographicMessageSyntax.h
1.78 KB
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gdcmCurve.h
2.54 KB
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gdcmDICOMDIR.h
984 bytes
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gdcmDICOMDIRGenerator.h
3.85 KB
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gdcmDIMSE.h
2.61 KB
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gdcmDataElement.h
9 KB
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gdcmDataEvent.h
1.53 KB
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gdcmDataSet.h
10.79 KB
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gdcmDataSet.txx
16.02 KB
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gdcmDataSetEvent.h
1.47 KB
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gdcmDataSetHelper.h
1.22 KB
11/09/2017 08:09:58 AM
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gdcmDecoder.h
1.16 KB
11/09/2017 08:09:58 AM
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gdcmDefinedTerms.h
1.56 KB
11/09/2017 08:09:58 AM
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gdcmDeflateStream.h
678 bytes
11/09/2017 08:09:58 AM
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gdcmDefs.h
2.04 KB
11/09/2017 08:09:58 AM
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gdcmDeltaEncodingCodec.h
1.08 KB
11/09/2017 08:09:58 AM
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gdcmDict.h
9.53 KB
11/09/2017 08:09:58 AM
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gdcmDictConverter.h
2.05 KB
11/09/2017 08:09:58 AM
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gdcmDictEntry.h
4.29 KB
11/09/2017 08:09:58 AM
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gdcmDictPrinter.h
1.04 KB
11/09/2017 08:09:58 AM
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gdcmDicts.h
2.22 KB
11/09/2017 08:09:58 AM
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gdcmDirectionCosines.h
1.94 KB
11/09/2017 08:09:58 AM
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gdcmDirectory.h
3.08 KB
11/09/2017 08:09:58 AM
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gdcmDirectoryHelper.h
3.51 KB
11/09/2017 08:09:58 AM
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gdcmDummyValueGenerator.h
1.15 KB
11/09/2017 08:09:58 AM
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gdcmDumper.h
1023 bytes
11/09/2017 08:09:58 AM
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gdcmElement.h
23.5 KB
11/09/2017 08:09:58 AM
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gdcmEmptyMaskGenerator.h
2.64 KB
11/09/2017 08:09:58 AM
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gdcmEncapsulatedDocument.h
866 bytes
11/09/2017 08:09:58 AM
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gdcmEnumeratedValues.h
1.53 KB
11/09/2017 08:09:58 AM
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gdcmEvent.h
3.07 KB
11/09/2017 08:09:58 AM
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gdcmException.h
3.24 KB
11/09/2017 08:09:58 AM
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gdcmExplicitDataElement.h
1.36 KB
11/09/2017 08:09:58 AM
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gdcmExplicitDataElement.txx
16.27 KB
11/09/2017 08:09:58 AM
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gdcmExplicitImplicitDataElement.h
1.81 KB
11/09/2017 08:09:58 AM
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gdcmExplicitImplicitDataElement.txx
14.69 KB
11/09/2017 08:09:58 AM
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gdcmFiducials.h
800 bytes
11/09/2017 08:09:58 AM
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gdcmFile.h
2.1 KB
11/09/2017 08:09:58 AM
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gdcmFileAnonymizer.h
2.84 KB
11/09/2017 08:09:58 AM
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gdcmFileChangeTransferSyntax.h
2.2 KB
11/09/2017 08:09:58 AM
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gdcmFileDecompressLookupTable.h
1.49 KB
11/09/2017 08:09:58 AM
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gdcmFileDerivation.h
3.19 KB
11/09/2017 08:09:58 AM
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gdcmFileExplicitFilter.h
2.43 KB
11/09/2017 08:09:58 AM
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gdcmFileMetaInformation.h
4.78 KB
11/09/2017 08:09:58 AM
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gdcmFileNameEvent.h
1.51 KB
11/09/2017 08:09:58 AM
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gdcmFileSet.h
1.62 KB
11/09/2017 08:09:58 AM
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gdcmFileStreamer.h
4.04 KB
11/09/2017 08:09:58 AM
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gdcmFilename.h
2.26 KB
11/09/2017 08:09:58 AM
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gdcmFilenameGenerator.h
2.09 KB
11/09/2017 08:09:58 AM
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gdcmFindPatientRootQuery.h
1.2 KB
11/09/2017 08:09:58 AM
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gdcmFindStudyRootQuery.h
1.41 KB
11/09/2017 08:09:58 AM
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gdcmFragment.h
6.13 KB
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gdcmFragment.txx
711 bytes
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gdcmGlobal.h
3.41 KB
11/09/2017 08:09:58 AM
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gdcmGroupDict.h
2.29 KB
11/09/2017 08:09:58 AM
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gdcmIOD.h
1.85 KB
11/09/2017 08:09:58 AM
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gdcmIODEntry.h
2.97 KB
11/09/2017 08:09:58 AM
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gdcmIODs.h
2.02 KB
11/09/2017 08:09:58 AM
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gdcmIPPSorter.h
4.62 KB
11/09/2017 08:09:58 AM
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gdcmIconImage.h
2.47 KB
11/09/2017 08:09:58 AM
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gdcmIconImageFilter.h
2.37 KB
11/09/2017 08:09:58 AM
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gdcmIconImageGenerator.h
3.09 KB
11/09/2017 08:09:58 AM
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gdcmImage.h
3.63 KB
11/09/2017 08:09:58 AM
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gdcmImageApplyLookupTable.h
1.11 KB
11/09/2017 08:09:58 AM
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gdcmImageChangePhotometricInterpretation.h
3.77 KB
11/09/2017 08:09:58 AM
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gdcmImageChangePlanarConfiguration.h
2.72 KB
11/09/2017 08:09:58 AM
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gdcmImageChangeTransferSyntax.h
3.29 KB
11/09/2017 08:09:58 AM
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gdcmImageCodec.h
4.51 KB
11/09/2017 08:09:58 AM
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gdcmImageConverter.h
1.27 KB
11/09/2017 08:09:58 AM
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gdcmImageFragmentSplitter.h
1.53 KB
11/09/2017 08:09:58 AM
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gdcmImageHelper.h
6.92 KB
11/09/2017 08:09:58 AM
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gdcmImageReader.h
1.55 KB
11/09/2017 08:09:58 AM
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gdcmImageRegionReader.h
2.44 KB
11/09/2017 08:09:58 AM
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gdcmImageToImageFilter.h
1.15 KB
11/09/2017 08:09:58 AM
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gdcmImageWriter.h
1.46 KB
11/09/2017 08:09:58 AM
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gdcmImplementationClassUIDSub.h
1.27 KB
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gdcmImplementationUIDSub.h
1.14 KB
11/09/2017 08:09:58 AM
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gdcmImplementationVersionNameSub.h
1.28 KB
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gdcmImplicitDataElement.h
1.49 KB
11/09/2017 08:09:58 AM
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gdcmImplicitDataElement.txx
18.5 KB
11/09/2017 08:09:58 AM
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gdcmItem.h
9.65 KB
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gdcmItem.txx
1.82 KB
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gdcmJPEG12Codec.h
1.26 KB
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gdcmJPEG16Codec.h
1.25 KB
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gdcmJPEG2000Codec.h
2.73 KB
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gdcmJPEG8Codec.h
1.25 KB
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gdcmJPEGCodec.h
3.23 KB
11/09/2017 08:09:58 AM
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gdcmJPEGLSCodec.h
2.99 KB
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gdcmJSON.h
1.12 KB
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gdcmKAKADUCodec.h
1.06 KB
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gdcmLO.h
1.81 KB
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gdcmLegacyMacro.h
2.72 KB
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gdcmLookupTable.h
3.33 KB
11/09/2017 08:09:58 AM
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gdcmMD5.h
1.41 KB
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gdcmMacro.h
2.93 KB
11/09/2017 08:09:58 AM
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gdcmMacroEntry.h
2.57 KB
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gdcmMacros.h
2.05 KB
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gdcmMaximumLengthSub.h
1.39 KB
11/09/2017 08:09:58 AM
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gdcmMediaStorage.h
7.39 KB
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gdcmMeshPrimitive.h
2.34 KB
11/09/2017 08:09:58 AM
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gdcmModalityPerformedProcedureStepCreateQuery.h
1.3 KB
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gdcmModalityPerformedProcedureStepSetQuery.h
1.28 KB
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gdcmModule.h
3.15 KB
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gdcmModuleEntry.h
2.51 KB
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gdcmModules.h
2.06 KB
11/09/2017 08:09:58 AM
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gdcmMovePatientRootQuery.h
1.21 KB
11/09/2017 08:09:58 AM
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gdcmMoveStudyRootQuery.h
1.19 KB
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gdcmMrProtocol.h
2.17 KB
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gdcmNActionMessages.h
1.27 KB
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gdcmNCreateMessages.h
1.27 KB
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gdcmNDeleteMessages.h
1.27 KB
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gdcmNEventReportMessages.h
1.31 KB
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gdcmNGetMessages.h
1.24 KB
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gdcmNSetMessages.h
1.24 KB
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gdcmNestedModuleEntries.h
1.88 KB
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gdcmNetworkEvents.h
1.95 KB
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gdcmNetworkStateID.h
2.69 KB
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gdcmNormalizedMessageFactory.h
1.64 KB
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gdcmNormalizedNetworkFunctions.h
3.03 KB
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gdcmObject.h
2.98 KB
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gdcmOpenSSLCryptoFactory.h
1.18 KB
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gdcmOpenSSLCryptographicMessageSyntax.h
2.09 KB
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gdcmOpenSSLP7CryptoFactory.h
1.12 KB
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gdcmOpenSSLP7CryptographicMessageSyntax.h
2.37 KB
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gdcmOrientation.h
1.77 KB
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gdcmOverlay.h
3.71 KB
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gdcmPDBElement.h
1.69 KB
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gdcmPDBHeader.h
2.92 KB
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gdcmPDFCodec.h
1003 bytes
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gdcmPDUFactory.h
3.42 KB
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gdcmPDataTFPDU.h
1.89 KB
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gdcmPGXCodec.h
1.21 KB
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gdcmPNMCodec.h
1.52 KB
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gdcmPVRGCodec.h
1.42 KB
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gdcmParseException.h
2.2 KB
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gdcmParser.h
3.98 KB
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gdcmPatient.h
899 bytes
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gdcmPersonName.h
2.45 KB
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gdcmPhotometricInterpretation.h
2.75 KB
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gdcmPixelFormat.h
7.44 KB
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gdcmPixmap.h
2.29 KB
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gdcmPixmapReader.h
2.05 KB
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Editing: gdcmImageHelper.h
Close
/*========================================================================= Program: GDCM (Grassroots DICOM). A DICOM library Copyright (c) 2006-2011 Mathieu Malaterre All rights reserved. See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notice for more information. =========================================================================*/ #ifndef GDCMIMAGEHELPER_H #define GDCMIMAGEHELPER_H #include "gdcmTypes.h" #include "gdcmTag.h" #include <vector> #include "gdcmPixelFormat.h" #include "gdcmPhotometricInterpretation.h" #include "gdcmSmartPointer.h" #include "gdcmLookupTable.h" namespace gdcm { class MediaStorage; class DataSet; class File; class Image; class Pixmap; class ByteValue; // minimal struct: struct RealWorldValueMappingContent { double RealWorldValueIntercept; double RealWorldValueSlope; // http://dicom.nema.org/MEDICAL/DICOM/2014c/output/chtml/part16/sect_CID_7181.html std::string CodeValue; std::string CodeMeaning; }; /** * \brief ImageHelper (internal class, not intended for user level) * * \details * Helper for writing World images in DICOM. DICOM has a 'template' approach to image where * MR Image Storage are distinct object from Enhanced MR Image Storage. For example the * Pixel Spacing in one object is not at the same position (ie Tag) as in the other * this class is the central (read: fragile) place where all the dispatching is done from * a unified view of a world image (typically VTK or ITK point of view) down to the low * level DICOM point of view. * * \warning: do not expect the API of this class to be maintained at any point, since as * Modalities are added the API might have to be augmented or behavior changed to cope * with new modalities. */ class GDCM_EXPORT ImageHelper { public: /// GDCM 1.x compatibility issue: /// Do not use anymore. This hack was used for some MR Image Storage /// generated by Philips Modality. /// When "Combine MR Rescaling" is set to TRUE, rescaling is removed. But /// when set to FALSE, the Modality LUT was exported. Internally GDCM now /// handles this gracefully. static void SetForceRescaleInterceptSlope(bool); static bool GetForceRescaleInterceptSlope(); /// Since GDCM 2.6.1 Philips Medical System are read using the Private Field /// For Rescale Slope/Intercept by default. This mechanism can be deactivated /// using the following API: /// This option has no effect when ForceRescaleInterceptSlope is set to true /// GDCM will only read those private attribute but never write them out. static void SetPMSRescaleInterceptSlope(bool); static bool GetPMSRescaleInterceptSlope(); /// GDCM 1.x compatibility issue: /// When using ReWrite an MR Image Storage would be rewritten as Secondary Capture Object while /// still having a Pixel Spacing tag (0028,0030). If you have deal with those files, use this /// very special flag to handle them /// Unless explicitly set elsewhere by the standard, it will use value from 0028,0030 / 0018,0088 /// for the Pixel Spacing of the Image static void SetForcePixelSpacing(bool); static bool GetForcePixelSpacing(); /// This function checks tags (0x0028, 0x0010) and (0x0028, 0x0011) for the /// rows and columns of the image in pixels (as opposed to actual distances). /// The output is {col , row} static std::vector<unsigned int> GetDimensionsValue(const File& f); static void SetDimensionsValue(File& f, const Pixmap & img); /// This function returns pixel information about an image from its dataset /// That includes samples per pixel and bit depth (in that order) static PixelFormat GetPixelFormatValue(const File& f); /// Set/Get shift/scale from/to a file /// \warning this function reads/sets the Slope/Intercept in appropriate /// class storage, but also Grid Scaling in RT Dose Storage /// Can't take a dataset because the mediastorage of the file must be known static std::vector<double> GetRescaleInterceptSlopeValue(File const & f); static void SetRescaleInterceptSlopeValue(File & f, const Image & img); // read only for now static bool GetRealWorldValueMappingContent(File const & f, RealWorldValueMappingContent & rwvmc); /// Set/Get Origin (IPP) from/to a file static std::vector<double> GetOriginValue(File const & f); static void SetOriginValue(DataSet & ds, const Image & img); /// Get Direction Cosines (IOP) from/to a file /// Requires a file because mediastorage must be known static std::vector<double> GetDirectionCosinesValue(File const & f); /// Set Direction Cosines (IOP) from/to a file /// When IOD does not defines what is IOP (eg. typically Secondary Capture Image Storage) /// this call will simply remove the IOP attribute. /// Else in case of MR/CT image storage, this call will properly lookup the correct attribute /// to store the IOP. // FIXME: There is a major issue for image with multiple IOP (eg. Enhanced * Image Storage). static void SetDirectionCosinesValue(DataSet & ds, const std::vector<double> & dircos); /// Set/Get Spacing from/to a File static std::vector<double> GetSpacingValue(File const & f); static void SetSpacingValue(DataSet & ds, const std::vector<double> & spacing); /// DO NOT USE static bool ComputeSpacingFromImagePositionPatient(const std::vector<double> &imageposition, std::vector<double> & spacing); static bool GetDirectionCosinesFromDataSet(DataSet const & ds, std::vector<double> & dircos); //functions to get more information from a file //useful for the stream image reader, which fills in necessary image information //distinctly from the reader-style data input static PhotometricInterpretation GetPhotometricInterpretationValue(File const& f); //returns the configuration of colors in a plane, either RGB RGB RGB or RRR GGG BBB static unsigned int GetPlanarConfigurationValue(const File& f); /// returns the lookup table of an image file static SmartPointer<LookupTable> GetLUT(File const& f); // Moved from PixampReader to here. Generally used for photometric interpretation. static const ByteValue* GetPointerFromElement(Tag const &tag, File const& f); /// Moved from MediaStorage here, since we need extra info stored in PixelFormat & PhotometricInterpretation static MediaStorage ComputeMediaStorageFromModality(const char *modality, unsigned int dimension = 2, PixelFormat const & pf = PixelFormat(), PhotometricInterpretation const & pi = PhotometricInterpretation(), double rescaleintercept = 0, double rescaleslope = 1 ); protected: static Tag GetSpacingTagFromMediaStorage(MediaStorage const &ms); static Tag GetZSpacingTagFromMediaStorage(MediaStorage const &ms); private: static bool ForceRescaleInterceptSlope; static bool PMSRescaleInterceptSlope; static bool ForcePixelSpacing; }; } // end namespace gdcm #endif // GDCMIMAGEHELPER_H