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gdcm-2.8
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10/28/2024 06:50:42 AM
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gdcmAAbortPDU.h
1.43 KB
11/09/2017 08:09:58 AM
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gdcmAAssociateACPDU.h
3.22 KB
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gdcmAAssociateRJPDU.h
1.35 KB
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gdcmAAssociateRQPDU.h
5.41 KB
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gdcmARTIMTimer.h
2.48 KB
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gdcmAReleaseRPPDU.h
1.28 KB
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gdcmAReleaseRQPDU.h
1.28 KB
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gdcmASN1.h
1.22 KB
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gdcmAbstractSyntax.h
1.78 KB
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gdcmAnonymizeEvent.h
1.5 KB
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gdcmAnonymizer.h
6.67 KB
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gdcmApplicationContext.h
1.56 KB
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gdcmApplicationEntity.h
1.81 KB
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gdcmAsynchronousOperationsWindowSub.h
1.37 KB
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gdcmAttribute.h
32.28 KB
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gdcmAudioCodec.h
1011 bytes
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gdcmBase64.h
1.9 KB
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gdcmBaseCompositeMessage.h
2.39 KB
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gdcmBaseNormalizedMessage.h
2.22 KB
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gdcmBasePDU.h
1.96 KB
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gdcmBaseQuery.h
2.74 KB
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gdcmBaseRootQuery.h
4.33 KB
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gdcmBasicOffsetTable.h
3.17 KB
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gdcmBitmap.h
5.7 KB
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gdcmBitmapToBitmapFilter.h
1.22 KB
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gdcmBoxRegion.h
2.02 KB
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gdcmByteBuffer.h
2.45 KB
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gdcmByteSwap.h
1.46 KB
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gdcmByteSwap.txx
4.55 KB
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gdcmByteSwapFilter.h
1.1 KB
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gdcmByteValue.h
6.53 KB
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gdcmCAPICryptoFactory.h
931 bytes
11/09/2017 08:09:58 AM
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gdcmCAPICryptographicMessageSyntax.h
1.96 KB
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gdcmCEchoMessages.h
1.46 KB
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gdcmCFindMessages.h
1.65 KB
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gdcmCMoveMessages.h
1.88 KB
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gdcmCP246ExplicitDataElement.h
1.59 KB
11/09/2017 08:09:58 AM
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gdcmCP246ExplicitDataElement.txx
6.51 KB
11/09/2017 08:09:58 AM
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gdcmCSAElement.h
4.76 KB
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gdcmCSAHeader.h
4.89 KB
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gdcmCSAHeader.txx
957 bytes
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gdcmCSAHeaderDict.h
2.84 KB
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gdcmCSAHeaderDictEntry.h
2.74 KB
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gdcmCStoreMessages.h
1.8 KB
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gdcmCodeString.h
3.67 KB
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gdcmCodec.h
809 bytes
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gdcmCoder.h
1.28 KB
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gdcmCommand.h
5.09 KB
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gdcmCommandDataSet.h
1.7 KB
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gdcmCompositeMessageFactory.h
2.44 KB
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gdcmCompositeNetworkFunctions.h
5.84 KB
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gdcmConfigure.h
5.53 KB
02/05/2018 04:49:23 PM
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gdcmConstCharWrapper.h
1.6 KB
11/09/2017 08:09:58 AM
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gdcmCryptoFactory.h
1.85 KB
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gdcmCryptographicMessageSyntax.h
1.78 KB
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gdcmCurve.h
2.54 KB
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gdcmDICOMDIR.h
984 bytes
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gdcmDICOMDIRGenerator.h
3.85 KB
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gdcmDIMSE.h
2.61 KB
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gdcmDataElement.h
9 KB
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gdcmDataEvent.h
1.53 KB
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gdcmDataSet.h
10.79 KB
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gdcmDataSet.txx
16.02 KB
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gdcmDataSetEvent.h
1.47 KB
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gdcmDataSetHelper.h
1.22 KB
11/09/2017 08:09:58 AM
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gdcmDecoder.h
1.16 KB
11/09/2017 08:09:58 AM
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gdcmDefinedTerms.h
1.56 KB
11/09/2017 08:09:58 AM
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gdcmDeflateStream.h
678 bytes
11/09/2017 08:09:58 AM
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gdcmDefs.h
2.04 KB
11/09/2017 08:09:58 AM
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gdcmDeltaEncodingCodec.h
1.08 KB
11/09/2017 08:09:58 AM
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gdcmDict.h
9.53 KB
11/09/2017 08:09:58 AM
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gdcmDictConverter.h
2.05 KB
11/09/2017 08:09:58 AM
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gdcmDictEntry.h
4.29 KB
11/09/2017 08:09:58 AM
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gdcmDictPrinter.h
1.04 KB
11/09/2017 08:09:58 AM
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gdcmDicts.h
2.22 KB
11/09/2017 08:09:58 AM
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gdcmDirectionCosines.h
1.94 KB
11/09/2017 08:09:58 AM
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gdcmDirectory.h
3.08 KB
11/09/2017 08:09:58 AM
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gdcmDirectoryHelper.h
3.51 KB
11/09/2017 08:09:58 AM
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gdcmDummyValueGenerator.h
1.15 KB
11/09/2017 08:09:58 AM
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gdcmDumper.h
1023 bytes
11/09/2017 08:09:58 AM
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gdcmElement.h
23.5 KB
11/09/2017 08:09:58 AM
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gdcmEmptyMaskGenerator.h
2.64 KB
11/09/2017 08:09:58 AM
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gdcmEncapsulatedDocument.h
866 bytes
11/09/2017 08:09:58 AM
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gdcmEnumeratedValues.h
1.53 KB
11/09/2017 08:09:58 AM
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gdcmEvent.h
3.07 KB
11/09/2017 08:09:58 AM
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gdcmException.h
3.24 KB
11/09/2017 08:09:58 AM
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gdcmExplicitDataElement.h
1.36 KB
11/09/2017 08:09:58 AM
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gdcmExplicitDataElement.txx
16.27 KB
11/09/2017 08:09:58 AM
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gdcmExplicitImplicitDataElement.h
1.81 KB
11/09/2017 08:09:58 AM
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gdcmExplicitImplicitDataElement.txx
14.69 KB
11/09/2017 08:09:58 AM
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gdcmFiducials.h
800 bytes
11/09/2017 08:09:58 AM
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gdcmFile.h
2.1 KB
11/09/2017 08:09:58 AM
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gdcmFileAnonymizer.h
2.84 KB
11/09/2017 08:09:58 AM
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gdcmFileChangeTransferSyntax.h
2.2 KB
11/09/2017 08:09:58 AM
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gdcmFileDecompressLookupTable.h
1.49 KB
11/09/2017 08:09:58 AM
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gdcmFileDerivation.h
3.19 KB
11/09/2017 08:09:58 AM
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gdcmFileExplicitFilter.h
2.43 KB
11/09/2017 08:09:58 AM
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gdcmFileMetaInformation.h
4.78 KB
11/09/2017 08:09:58 AM
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gdcmFileNameEvent.h
1.51 KB
11/09/2017 08:09:58 AM
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gdcmFileSet.h
1.62 KB
11/09/2017 08:09:58 AM
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gdcmFileStreamer.h
4.04 KB
11/09/2017 08:09:58 AM
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gdcmFilename.h
2.26 KB
11/09/2017 08:09:58 AM
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gdcmFilenameGenerator.h
2.09 KB
11/09/2017 08:09:58 AM
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gdcmFindPatientRootQuery.h
1.2 KB
11/09/2017 08:09:58 AM
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gdcmFindStudyRootQuery.h
1.41 KB
11/09/2017 08:09:58 AM
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gdcmFragment.h
6.13 KB
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gdcmFragment.txx
711 bytes
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gdcmGlobal.h
3.41 KB
11/09/2017 08:09:58 AM
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gdcmGroupDict.h
2.29 KB
11/09/2017 08:09:58 AM
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gdcmIOD.h
1.85 KB
11/09/2017 08:09:58 AM
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gdcmIODEntry.h
2.97 KB
11/09/2017 08:09:58 AM
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gdcmIODs.h
2.02 KB
11/09/2017 08:09:58 AM
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gdcmIPPSorter.h
4.62 KB
11/09/2017 08:09:58 AM
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gdcmIconImage.h
2.47 KB
11/09/2017 08:09:58 AM
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gdcmIconImageFilter.h
2.37 KB
11/09/2017 08:09:58 AM
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gdcmIconImageGenerator.h
3.09 KB
11/09/2017 08:09:58 AM
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gdcmImage.h
3.63 KB
11/09/2017 08:09:58 AM
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gdcmImageApplyLookupTable.h
1.11 KB
11/09/2017 08:09:58 AM
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gdcmImageChangePhotometricInterpretation.h
3.77 KB
11/09/2017 08:09:58 AM
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gdcmImageChangePlanarConfiguration.h
2.72 KB
11/09/2017 08:09:58 AM
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gdcmImageChangeTransferSyntax.h
3.29 KB
11/09/2017 08:09:58 AM
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gdcmImageCodec.h
4.51 KB
11/09/2017 08:09:58 AM
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gdcmImageConverter.h
1.27 KB
11/09/2017 08:09:58 AM
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gdcmImageFragmentSplitter.h
1.53 KB
11/09/2017 08:09:58 AM
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gdcmImageHelper.h
6.92 KB
11/09/2017 08:09:58 AM
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gdcmImageReader.h
1.55 KB
11/09/2017 08:09:58 AM
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gdcmImageRegionReader.h
2.44 KB
11/09/2017 08:09:58 AM
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gdcmImageToImageFilter.h
1.15 KB
11/09/2017 08:09:58 AM
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gdcmImageWriter.h
1.46 KB
11/09/2017 08:09:58 AM
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gdcmImplementationClassUIDSub.h
1.27 KB
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gdcmImplementationUIDSub.h
1.14 KB
11/09/2017 08:09:58 AM
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gdcmImplementationVersionNameSub.h
1.28 KB
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gdcmImplicitDataElement.h
1.49 KB
11/09/2017 08:09:58 AM
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gdcmImplicitDataElement.txx
18.5 KB
11/09/2017 08:09:58 AM
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gdcmItem.h
9.65 KB
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gdcmItem.txx
1.82 KB
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gdcmJPEG12Codec.h
1.26 KB
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gdcmJPEG16Codec.h
1.25 KB
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gdcmJPEG2000Codec.h
2.73 KB
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gdcmJPEG8Codec.h
1.25 KB
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gdcmJPEGCodec.h
3.23 KB
11/09/2017 08:09:58 AM
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gdcmJPEGLSCodec.h
2.99 KB
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gdcmJSON.h
1.12 KB
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gdcmKAKADUCodec.h
1.06 KB
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gdcmLO.h
1.81 KB
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gdcmLegacyMacro.h
2.72 KB
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gdcmLookupTable.h
3.33 KB
11/09/2017 08:09:58 AM
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gdcmMD5.h
1.41 KB
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gdcmMacro.h
2.93 KB
11/09/2017 08:09:58 AM
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gdcmMacroEntry.h
2.57 KB
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gdcmMacros.h
2.05 KB
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gdcmMaximumLengthSub.h
1.39 KB
11/09/2017 08:09:58 AM
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gdcmMediaStorage.h
7.39 KB
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gdcmMeshPrimitive.h
2.34 KB
11/09/2017 08:09:58 AM
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gdcmModalityPerformedProcedureStepCreateQuery.h
1.3 KB
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gdcmModalityPerformedProcedureStepSetQuery.h
1.28 KB
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gdcmModule.h
3.15 KB
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gdcmModuleEntry.h
2.51 KB
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gdcmModules.h
2.06 KB
11/09/2017 08:09:58 AM
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gdcmMovePatientRootQuery.h
1.21 KB
11/09/2017 08:09:58 AM
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gdcmMoveStudyRootQuery.h
1.19 KB
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gdcmMrProtocol.h
2.17 KB
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gdcmNActionMessages.h
1.27 KB
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gdcmNCreateMessages.h
1.27 KB
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gdcmNDeleteMessages.h
1.27 KB
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gdcmNEventReportMessages.h
1.31 KB
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gdcmNGetMessages.h
1.24 KB
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gdcmNSetMessages.h
1.24 KB
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gdcmNestedModuleEntries.h
1.88 KB
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gdcmNetworkEvents.h
1.95 KB
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gdcmNetworkStateID.h
2.69 KB
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gdcmNormalizedMessageFactory.h
1.64 KB
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gdcmNormalizedNetworkFunctions.h
3.03 KB
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gdcmObject.h
2.98 KB
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gdcmOpenSSLCryptoFactory.h
1.18 KB
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gdcmOpenSSLCryptographicMessageSyntax.h
2.09 KB
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gdcmOpenSSLP7CryptoFactory.h
1.12 KB
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gdcmOpenSSLP7CryptographicMessageSyntax.h
2.37 KB
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gdcmOrientation.h
1.77 KB
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gdcmOverlay.h
3.71 KB
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gdcmPDBElement.h
1.69 KB
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gdcmPDBHeader.h
2.92 KB
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gdcmPDFCodec.h
1003 bytes
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gdcmPDUFactory.h
3.42 KB
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gdcmPDataTFPDU.h
1.89 KB
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gdcmPGXCodec.h
1.21 KB
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gdcmPNMCodec.h
1.52 KB
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gdcmPVRGCodec.h
1.42 KB
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gdcmParseException.h
2.2 KB
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gdcmParser.h
3.98 KB
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gdcmPatient.h
899 bytes
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gdcmPersonName.h
2.45 KB
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gdcmPhotometricInterpretation.h
2.75 KB
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gdcmPixelFormat.h
7.44 KB
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gdcmPixmap.h
2.29 KB
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gdcmPixmapReader.h
2.05 KB
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Editing: gdcmDataSet.h
Close
/*========================================================================= Program: GDCM (Grassroots DICOM). A DICOM library Copyright (c) 2006-2011 Mathieu Malaterre All rights reserved. See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notice for more information. =========================================================================*/ #ifndef GDCMDATASET_H #define GDCMDATASET_H #include "gdcmDataElement.h" #include "gdcmTag.h" #include "gdcmVR.h" #include "gdcmElement.h" #include "gdcmMediaStorage.h" #include <set> #include <iterator> namespace gdcm_ns { class GDCM_EXPORT DataElementException : public std::exception {}; class PrivateTag; /** * \brief Class to represent a Data Set (which contains Data Elements) * \details A Data Set represents an instance of a real world Information Object * \note * DATA SET: * Exchanged information consisting of a structured set of Attribute values * directly or indirectly related to Information Objects. The value of each * Attribute in a Data Set is expressed as a Data Element. * A collection of Data Elements ordered by increasing Data Element Tag * number that is an encoding of the values of Attributes of a real world * object. * \note * Implementation note. If one do: * DataSet ds; * ds.SetLength(0); * ds.Read(is); * setting length to 0 actually means try to read is as if it was a root * DataSet. Other value are undefined (nested dataset with undefined length) * or defined length (different from 0) means nested dataset with defined * length. * * \warning * a DataSet does not have a Transfer Syntax type, only a File does. */ class GDCM_EXPORT DataSet { friend class CSAHeader; public: typedef std::set<DataElement> DataElementSet; typedef DataElementSet::const_iterator ConstIterator; typedef DataElementSet::iterator Iterator; typedef DataElementSet::size_type SizeType; //typedef typename DataElementSet::iterator iterator; ConstIterator Begin() const { return DES.begin(); } Iterator Begin() { return DES.begin(); } ConstIterator End() const { return DES.end(); } Iterator End() { return DES.end(); } const DataElementSet &GetDES() const { return DES; } DataElementSet &GetDES() { return DES; } void Clear() { DES.clear(); assert( DES.empty() ); } SizeType Size() const { return DES.size(); } void Print(std::ostream &os, std::string const &indent = "") const { // CT_Phillips_JPEG2K_Decompr_Problem.dcm has a SQ of length == 0 //int s = DES.size(); //assert( s ); //std::copy(DES.begin(), DES.end(), // std::ostream_iterator<DataElement>(os, "\n")); ConstIterator it = DES.begin(); for( ; it != DES.end(); ++it) { os << indent << *it << "\n"; } } template <typename TDE> unsigned int ComputeGroupLength(Tag const &tag) const { assert( tag.GetElement() == 0x0 ); const DataElement r(tag); ConstIterator it = DES.find(r); unsigned int res = 0; for( ++it; it != DES.end() && it->GetTag().GetGroup() == tag.GetGroup(); ++it) { assert( it->GetTag().GetElement() != 0x0 ); assert( it->GetTag().GetGroup() == tag.GetGroup() ); res += it->GetLength<TDE>(); } return res; } template <typename TDE> VL GetLength() const { if( DES.empty() ) return 0; assert( !DES.empty() ); VL ll = 0; assert( ll == 0 ); ConstIterator it = DES.begin(); for( ; it != DES.end(); ++it) { assert( !(it->GetLength<TDE>().IsUndefined()) ); if ( it->GetTag() != Tag(0xfffe,0xe00d) ) { ll += it->GetLength<TDE>(); } } return ll; } /// Insert a DataElement in the DataSet. /// \warning: Tag need to be >= 0x8 to be considered valid data element void Insert(const DataElement& de) { // FIXME: there is a special case where a dataset can have value < 0x8, see: // $ gdcmdump --csa gdcmData/SIEMENS-JPEG-CorruptFrag.dcm if( de.GetTag().GetGroup() >= 0x0008 || de.GetTag().GetGroup() == 0x4 ) { // prevent user error: if( de.GetTag() == Tag(0xfffe,0xe00d) || de.GetTag() == Tag(0xfffe,0xe0dd) || de.GetTag() == Tag(0xfffe,0xe000) ) { } else { InsertDataElement( de ); } } else { gdcmErrorMacro( "Cannot add element with group < 0x0008 and != 0x4 in the dataset: " << de.GetTag() ); } } /// Replace a dataelement with another one void Replace(const DataElement& de) { ConstIterator it = DES.find(de); if( it != DES.end() ) { // detect loop: gdcmAssertAlwaysMacro( &*it != &de ); DES.erase(it); } DES.insert(de); } /// Only replace a DICOM attribute when it is missing or empty void ReplaceEmpty(const DataElement& de) { ConstIterator it = DES.find(de); if( it != DES.end() && it->IsEmpty() ) { // detect loop: gdcmAssertAlwaysMacro( &*it != &de ); DES.erase(it); } DES.insert(de); } /// Completely remove a dataelement from the dataset SizeType Remove(const Tag& tag) { DataElementSet::size_type count = DES.erase(tag); assert( count == 0 || count == 1 ); return count; } /// Return the DataElement with Tag 't' /// \warning: /// This only search at the 'root level' of the DataSet //DataElement& GetDataElement(const Tag &t) { // DataElement r(t); // Iterator it = DES.find(r); // if( it != DES.end() ) // return *it; // return GetDEEnd(); // } const DataElement& GetDataElement(const Tag &t) const { const DataElement r(t); ConstIterator it = DES.find(r); if( it != DES.end() ) return *it; return GetDEEnd(); } const DataElement& operator[] (const Tag &t) const { return GetDataElement(t); } const DataElement& operator() (uint16_t group, uint16_t element) const { return GetDataElement( Tag(group,element) ); } /// Return the private creator of the private tag 't': std::string GetPrivateCreator(const Tag &t) const; /// Look up if private tag 't' is present in the dataset: bool FindDataElement(const PrivateTag &t) const; /// Return the dataelement const DataElement& GetDataElement(const PrivateTag &t) const; // DUMB: this only search within the level of the current DataSet bool FindDataElement(const Tag &t) const { const DataElement r(t); //ConstIterator it = DES.find(r); if( DES.find(r) != DES.end() ) { return true; } return false; } // WARNING: // This only search at the same level as the DataSet is ! const DataElement& FindNextDataElement(const Tag &t) const { const DataElement r(t); ConstIterator it = DES.lower_bound(r); if( it != DES.end() ) return *it; return GetDEEnd(); } /// Returns if the dataset is empty bool IsEmpty() const { return DES.empty(); }; DataSet& operator=(DataSet const &val) { DES = val.DES; return *this; } /* template <typename TOperation> void ExecuteOperation(TOperation & operation) { assert( !DES.empty() ); DataElementSet::iterator it = Begin(); for( ; it != End(); ++it) { DataElement &de = (DataElement&)*it; operation( de ); } } */ template <typename TDE, typename TSwap> std::istream &ReadNested(std::istream &is); template <typename TDE, typename TSwap> std::istream &Read(std::istream &is); template <typename TDE, typename TSwap> std::istream &ReadUpToTag(std::istream &is, const Tag &t, std::set<Tag> const & skiptags); template <typename TDE, typename TSwap> std::istream &ReadUpToTagWithLength(std::istream &is, const Tag &t, std::set<Tag> const & skiptags, VL & length); template <typename TDE, typename TSwap> std::istream &ReadSelectedTags(std::istream &is, const std::set<Tag> & tags, bool readvalues = true); template <typename TDE, typename TSwap> std::istream &ReadSelectedTagsWithLength(std::istream &is, const std::set<Tag> & tags, VL & length, bool readvalues = true); template <typename TDE, typename TSwap> std::istream &ReadSelectedPrivateTags(std::istream &is, const std::set<PrivateTag> & tags, bool readvalues = true); template <typename TDE, typename TSwap> std::istream &ReadSelectedPrivateTagsWithLength(std::istream &is, const std::set<PrivateTag> & tags, VL & length, bool readvalues = true); template <typename TDE, typename TSwap> std::ostream const &Write(std::ostream &os) const; template <typename TDE, typename TSwap> std::istream &ReadWithLength(std::istream &is, VL &length); MediaStorage GetMediaStorage() const; protected: /* GetDEEnd is a Win32 only issue, one cannot use a dllexported * static member data in an inline function, otherwise symbol * will get reported as missing in any dll using the inlined function */ const DataElement& GetDEEnd() const; // This function is not safe, it does not check for the value of the tag // so depending whether we are getting called from a dataset or file meta header // the condition is different void InsertDataElement(const DataElement& de) { //if( de.GetTag() == Tag(0xfffe,0xe00d) ) return; //if( de.GetTag() == Tag(0xfffe,0xe0dd) ) return; #ifndef NDEBUG std::pair<Iterator,bool> pr = DES.insert(de); if( pr.second == false ) { gdcmWarningMacro( "DataElement: " << de << " was already found, skipping duplicate entry.\n" "Original entry kept is: " << *pr.first ); } #else DES.insert(de); #endif assert( de.IsEmpty() || de.GetVL() == de.GetValue().GetLength() ); } protected: // Internal function, that will compute the actual Tag (if found) of // a requested Private Tag (XXXX,YY,"PRIVATE") Tag ComputeDataElement(const PrivateTag & t) const; private: DataElementSet DES; static DataElement DEEnd; friend std::ostream& operator<<(std::ostream &_os, const DataSet &val); }; //----------------------------------------------------------------------------- inline std::ostream& operator<<(std::ostream &os, const DataSet &val) { val.Print(os); return os; } #if defined(SWIGPYTHON) || defined(SWIGCSHARP) || defined(SWIGJAVA) || defined(SWIGPHP) /* * HACK: I need this temp class to be able to manipulate a std::set from python, * swig does not support wrapping of simple class like std::set... */ class SWIGDataSet { public: SWIGDataSet(DataSet &des):Internal(des),it(des.Begin()) {} const DataElement& GetCurrent() const { return *it; } void Start() { it = Internal.Begin(); } bool IsAtEnd() const { return it == Internal.End(); } void Next() { ++it; } private: DataSet & Internal; DataSet::ConstIterator it; }; #endif /* SWIG */ /** * \example SimplePrint.cs * This is a C# example on how to use gdcm::SWIGDataSet */ } // end namespace gdcm_ns #include "gdcmDataSet.txx" #endif //GDCMDATASET_H